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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGTTCTCGGCAAATCGATACGCGACACGGGATCCAACAAAGACATGGTCGTTTTGGTCTCTGATGGTGTCTCTGATTATGCCAATACCCTTCTCCAGgtactcttttcctttgccaattgtattattgcggaacgagaaatgaaaaatttctgatcactttatattaaatttgatattaatgtttcatttgacatgaatcctaaattttgttagttataacttattttaagtgatattgttgattatagacctcgtgggtagggtaaagggttttatgattgctttttgtgtag

Basic information

species Glycine max
transcript GLYMA20G37000.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37000.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G18480.1 (Arabidopsis thaliana), 5'ss of exon 1
TCGAGTTCTCGGCAAATCGATACGCGACACGGGATCCAACAAAGACATGGTCGTTTTGGTCTCTGATGGTGTCTCTGATTATGCCAATACCCTTCTCCAGgtactcttttcctttgccaattgtattattgcggaacgagaaatgaaaaatttctgatcactttatattaaatttgatattaatgtttcatttgacatgaatcctaaattttgttagttataacttattttaagtgatattgttgattatagacctcgtgggtagggtaaagggttttatgattgctttttgtgtag
| | ||  | || |||||||| || ||||| |||||||  || || ||||||| |||||| |||||||||||||| || ||  | || |   | ||| ||||    ||||  ||  | | || || || |        |||  | || | ||        ||||  ||| | |||||  ||||      ||||||     || ||    ||||||     |   ||  |||   |  ||| |                                                       
TAGGGTATTGGGTAAATCGATTCGTGACACTGGATCCACTAAGGATATGGTCGCTTTGGTTTCTGATGGTGTCTCAGACTACTCTAAGAAGTTACTCAAGgtttggtttttattgtctagttatagtagtttaa----agatctaaagagttctc-----ctttcgattgagtttgagcttaa------atttgat-cacatactg--ctttgtttaaagttgtttgcttttgattctatag-------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208238519|gb|GE039467.1|GE039467
EST:     TCGTTTTGGTCTCTGATGGTGTCTCTGATTATGCCAATACCCTTCTCCAG                         GCTGATGGGTGGAT
genomic: TCGTTTTGGTCTCTGATGGTGTCTCTGATTATGCCAATACCCTTCTCCAGgtactctttt ... ttttgtgtagGCTGATGGGTGGAT
EST: gi|193423125|gb|FK390570.1|FK390570
EST:     ATGGTGTCTCTGATTATGCCAATACCCTTCTCCAG                         GCTGATGGGTGGATAGTTGAGAAGATTAGTTTACTGGCAAATCCTAATCAA
genomic: ATGGTGTCTCTGATTATGCCAATACCCTTCTCCAGgtactctttt ... ttttgtgtagGCTGATGGGTGGATAGTTGAGAAGATTAGTTTACTGGCAAATCCTAATCAA
EST: gi|193390757|gb|FK355515.1|FK355515
EST:     GTCTCTGATGGTGTCTCTGATTATGCCAATACCCTTCTCCAG                         GCTGATGGGTGGATAGTTGAGAAGATTAGTTTACTGGCAAATCCTAATCAA
genomic: GTCTCTGATGGTGTCTCTGATTATGCCAATACCCTTCTCCAGgtactctttt ... ttttgtgtagGCTGATGGGTGGATAGTTGAGAAGATTAGTTTACTGGCAAATCCTAATCAA