1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTATCTTCCCAAGCCTCTAGTTGTGCGTTTTGCTCTAACTGAGTCCGACTCGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCTgtaagtcgttcatttcccatgtttcgaatttaacgttctcttctttaaaccttctgggtgggttccaaatttcatctgaaatacaaaatattacttttttatttattgtaaattttgtgattaagagttcatgtgcgtttacgctgcag
species | Glycine max |
transcript | GLYMA20G36400.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCT GACAGTTTTGATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTEST: gi|193691203|gb|FK630132.1|FK630132
genomic: CGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCTgtaagtcgtt ... tacgctgcagGACAGTTTTGATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTT
EST: CGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCT GACAGTTTTGATCTTCCTTCCGEST: gi|151399393|gb|EV269264.1|EV269264
genomic: CGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCTgtaagtcgtt ... tacgctgcagGACAGTTTTGATCTTCCTTCCG
EST: CGCCCAAATCCATAGAACCCGACCCTCAAACTCTTCTCCAAGAAATTGCT GACAGTCTTGATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTEST: gi|151397805|gb|EV267678.1|EV267678
genomic: CGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCTgtaagtcgtt ... tacgctgcagGACAGTTTTGATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTT
EST: CGCCCAAATCCATAGAACCTGACCCACAAACTCTTCTCCAAGAAATTGCT GACAGTTTTGATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTEST: gi|192326003|gb|FK016890.1|FK016890
genomic: CGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCTgtaagtcgtt ... tacgctgcagGACAGTTTTGATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTT
EST: CGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCT GACAGTTTTGATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTT
genomic: CGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCTgtaagtcgtt ... tacgctgcagGACAGTTTTGATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATCTTCCCAAGCCTCTAGTTGTGCGTTTTGCTCTAACTGAGTCCGACTCGCCCAAATCCATAGAACCTGACCCTCAAACTCTTCTCCAAGAAATTGCTgtaagtcgttcatttcccatgtttcgaatttaacgttctcttctttaaaccttctgggtgggttccaaatttcatctgaaatacaaaatattacttttttatttattgtaaattttgtgattaagagttcatgtgcgtttacgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA