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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCTCACAAGTTGGACAATACTTTGTCCCTGACGGAACTAGGGGCTACTTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTGgtcagtgattttaactcctatatacgtatatcacatagaggacaggtgtatgtatgtatgtatgtatgtatgtgttgcattttgaaaagaaaaataatcattattgtctttggtacattttaaaatgaaagaatctttctttgctccaatgttcttaacttctttccag

Basic information

species Glycine max
transcript GLYMA20G31700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333190|gb|FK026071.1|FK026071
EST:     TTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTG                         GCTGAACTTCAAGGAAGCCATGGTTGATGCAGACATTGACTTGTTCAAGAA
genomic: TTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTGgtcagtgatt ... ttctttccagGCTGAACTTCAAGGAAGCCGTGGTTGATGCAGACATTGACTTGTTCAAGAA
EST: gi|21285614|gb|BQ473485.1|BQ473485
EST:     TTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTG                         GTTGAACTTCAAGGAAGCAGTGGTTGATTCAGACATTGACTTGTTCAAGAA
genomic: TTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTGgtcagtgatt ... ttctttccagGCTGAACTTCAAGGAAGCCGTGGTTGATGCAGACATTGACTTGTTCAAGAA
EST: gi|15815010|gb|BI787285.1|BI787285
EST:     TTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTG                         GTTGAACTTCAAGGAAGCAGTGGTTGATTCAGACATTGACTTGTTCAAGAA
genomic: TTGGCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTGgtcagtgatt ... ttctttccagGCTGAACTTCAAGGAAGCCGTGGTTGATGCAGACATTGACTTGTTCAAGAA
EST: gi|22523847|gb|BU082658.1|BU082658
EST:     GCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTG                         GCTGAACTTCAAGGAAGCCATGGTTGATGCAGACATTGACTTGTTCAAGAA
genomic: GCTTCATTCACAGCATTTGTCTGTTATCCACCACTCTTACAAGTTTGgtcagtgatt ... ttctttccagGCTGAACTTCAAGGAAGCCGTGGTTGATGCAGACATTGACTTGTTCAAGAA