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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAGAAGGGTATCGAATCACTGTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAGgtttgtatcttttcttatcacaaaccctttttgtctttttttgttttgtttaattctttaataatattcctaaagctttggtttttaactaacttcacct...

Basic information

species Glycine max
transcript GLYMA20G29060.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29060.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0022g02110.t01 (Vitis vinifera), 5'ss of exon 1
GAAGGAGAAGGGTATCGAATCACTGTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAGgtttgtatcttttcttatcacaaaccctttttgtctttttttgttttgtttaattctttaataatattcctaaagctttgg-tttttaactaacttcacct--------------
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GAAGTCGAAGGGGATCGAAGCGTTGTTTCCCATTCAGGCTATGACGTTCGATACCATTCTTGATGGGTCTGATTTGGTTGGCCGGGCGCGTACTGGTCAGgtacgtatgattt---------------tggtgtctgttttgttgctgagaaaatatgggtaaaaaggagttgagttttgggttttcaattttctttacaaacaatataagatca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208221584|gb|GE016438.1|GE016438
EST:     ACACCGTTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAG                         GGTAAAACTCTGGCATTTGTGTTGACCCATATTAGAGTCTTTAATAAATGG
genomic: ACACCGTTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAGgtttgtatct ... gaaaatgtagGGTAAAACTCTGGCATTTGTGTTG-CCCATATTAGAGTCTTTAATAAATGG
EST: gi|208221359|gb|GE015961.1|GE015961
EST:     ACACCGTTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAG                         GGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCTTTAATAAATGGT
genomic: ACACCGTTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAGgtttgtatct ... gaaaatgtagGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCTTTAATAAATGGT