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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGCTGGCTATTGATGATGCCCAGAAGCATAAGATCGGGGATAACAAAAGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacacttagacactgccccccatgtggctttttatgcttttgttttgtttcaatcctgtgttgttttgatgctcaattaagcatgtttttgtgcct...

Basic information

species Glycine max
transcript GLYMA20G28980.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888562|gb|BQ741775.1|BQ741775
EST:     AGGGTTGCTCCTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|213598528|gb|DB958140.1|DB958140
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254333225|gb|GR850475.1|GR850475
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|14990859|gb|BI316532.1|BI316532
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254342980|gb|GR859142.1|GR859142
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|11412555|gb|BF424566.1|BF424566
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|17023313|gb|BM094347.1|BM094347
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254323593|gb|GR840234.1|GR840234
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|4396339|gb|AI495336.1|AI495336
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGNGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254316899|gb|GR828436.1|GR828436
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|208306002|gb|GE105747.1|GE105747
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAA
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAA
EST: gi|10709253|gb|BF008977.1|BF008977
EST:     TCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: TCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254339556|gb|GR848273.1|GR848273
EST:     AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGA                         TGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGAgtaagacact ... gttatttcagTGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG