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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGCAAAAATCCGATCAGAAAACAGCATCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaatccaactctcttgtttgtttcctgtgataatcttttttctctttttcctttgttaatcagcaaattgtaccttttgcctttaagaaaata...

Basic information

species Glycine max
transcript GLYMA20G28860.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283499|gb|AW596106.1|AW596106
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298198321|gb|HO039860.1|HO039860
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|13477757|gb|BG507506.1|BG507506
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298179497|gb|HO027968.1|HO027968
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|37994412|gb|CF806158.1|CF806158
EST:     CGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: CGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298196159|gb|HO044550.1|HO044550
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|151396296|gb|EV266173.1|EV266173
EST:     AGCATAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: AGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|209728724|gb|BW655417.1|BW655417
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298189869|gb|HO038272.1|HO038272
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|13252127|gb|BG363030.1|BG363030
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|37995644|gb|CF807233.1|CF807233
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298184335|gb|HO029548.1|HO029548
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298170432|gb|HO019056.1|HO019056
EST:     TCGAACCCGTCGTAGCAGCAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|209706869|gb|BW683209.1|BW683209
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|19053712|gb|BM732379.1|BM732379
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298182107|gb|HO026282.1|HO026282
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298184623|gb|HO029836.1|HO029836
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|12689395|gb|BG155792.1|BG155792
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298189141|gb|HO037544.1|HO037544
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCCGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|208237005|gb|GE034285.1|GE034285
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAG
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|209706331|gb|BW680691.1|BW680691
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|6719759|gb|AW307406.1|AW307406
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|213601717|gb|DB972425.1|DB972425
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|7233975|gb|AW569317.1|AW569317
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|11413256|gb|BF425267.1|BF425267
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|254326218|gb|GR840810.1|GR840810
EST:     CTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: CTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298181742|gb|HO025917.1|HO025917
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|21479899|gb|BQ576582.1|BQ576582
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|7925120|gb|AW831146.1|AW831146
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|4295457|gb|AI442336.1|AI442336
EST:     CGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: CGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|11413845|gb|BF425856.1|BF425856
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|15813927|gb|BI786202.1|BI786202
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|10238192|gb|BE807080.1|BE807080
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|207705544|gb|GD689438.1|GD689438
EST:     TGGTTTCTTCCGACAAG                         GATCCACGAGAGGAAGTCCTTCAAGCATGGTACATGGATGATAGTGATGAA
genomic: TGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|298175141|gb|HO014944.1|HO014944
EST:     GTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: GTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|8827270|gb|BE211000.1|BE211000
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
EST: gi|193334758|gb|FK300578.1|FK300578
EST:     TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAG                         GATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA
genomic: TCGAACCCGTCGTAGCAGAAAAACTTGTCACCATGGTTTCTTCCGACAAGgtattattaa ... tttttcatagGATCCACGAGAGGATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAA