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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGCGATCTCAAGCCTGAAAATTTCTTGCTCTCTAGCAAGGACGACCACGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGgttcacattgcttttactttggatcttgatttctttcttaggattctatctattgtatatttgcttcttctttatttccattcatcttgagtcataaact...

Basic information

species Glycine max
transcript GLYMA17G01730.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208255708|gb|GE056131.1|GE056131
EST:     CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAG                         GGAAGGTTTACCATGACGTGGTTGGCAGTG
genomic: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGgttcacattg ... attatttcagGGAAGGTTTACCATGATATGGTTGGCAGTG
EST: gi|24136888|gb|BU927398.1|BU927398
EST:     CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAG                         GGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGG
genomic: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGgttcacattg ... attatttcagGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGG
EST: gi|21888524|gb|BQ741737.1|BQ741737
EST:     CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAG                         GGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGG
genomic: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGgttcacattg ... attatttcagGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGG