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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTCCAATTTCTCGGTTCTCACCAAGAAGGGTGAGTCTCAGGCCGAGACTTCGCGCCAAATGCTCATCGACGACCACTTCGATGCATGCTTCGCCAGgtttctttttctttttcactttccattgcttttttgcattgctagttattataacttcttgtgacttgagattttcttctttgttag

Basic information

species Glycine max
transcript GLYMA12G09100.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09100.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G22620.1 (Arabidopsis thaliana), 5'ss of exon 1
GAAGCTCCAATTTCTCGGTTCTCACCAAGAAGGGTGAGTCTCAGGCCGAGACTTCGCGCCAAATGCTCATCGACGACCACTTCGATGCATGCTTCGCCAGgtttctttttctttttcactttccattgcttt----tttgcattgctagttattataacttc--ttgtgacttgagattttcttctttgttag--------
|||||||| ||||||| ||| | || ||||| || ||||||||||| || | ||| || || ||||| |||||||||  ||||||||  |||||| ||||||      || | ||    | || ||||  |     |||| | | ||||| | |   | ||   || |   | ||  |  |    ||   ||         
GAAGCTCCGATTTCTCCGTTTTGACGAAGAAAGGCGAGTCTCAGGCTGAAATTTCTCGTCAGATGCTTATCGACGACTCCTTCGATGTCTGCTTCACCAGgtcctgcattttcttattatatctattgaatcggtatttgaaat-ctagtcacttggatttggattttacatcgaattgatgaaattgactatgaagaatc

upper sequence: GLYMA12G09100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 1
GAAGCTCCAATTTCTCGGTTCTCACCAAGAAGGGTGAGTCTCAGGCCGAGACTTCGCGCCAAATGCTCATCGACGACCACTTCGATGCATGCTTCGCCAGgtttctttttctttttcactttcca----ttgcttttttgcatt----gctagttat-tataacttcttgt--gacttgagattt-tcttctttgttag--
| |||||||||||||| || |||||  |||| |||||| ||||||||||||| || ||||| |||||| | |||||   |||||| |  || ||| |||||||| |||||||||  || |||| |    || ||||| || | |       ||| || || || |||   |   ||  |   ||| |  | ||| |  |  
GGAGCTCCAATTTCTCTGTCCTCACTCAGAAAGGTGAGGCTCAGGCCGAGACCTCTCGCCAGATGCTCGTTGACGATGCCTTCGACGTGTGTTTCTCCAGgtttatttttctttc-cattttctaatatttccttttctgaaattaagaaaagtaatctacaagttccaattaaacccgccttttgttctgtttctctgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603085|gb|DB960404.1|DB960404
EST:     ACTTCGCGCCAAATGCTCATCGACGACCACTTCGATGCATGCTTCGCCAG                         TCCTTTGGCTCGATCCAAGAGAACAGCTGAAATCATTTGGGGACCTCGCCA
genomic: ACTTCGCGCCAAATGCTCATCGACGACCACTTCGATGCATGCTTCGCCAGgtttcttttt ... tctttgttagTCCTTTGGCTCGATCCAAGAGAACAGCTGAAATCATTTGGGGACCTCGCCA