Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGATACCATGCAGTACGTGCGCAGCAAGACCGCCACCGTGTGCTACGGCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAGgtgcgaggcagccgcgtggagggacgggcatggagtagtatccaggcgtggggcgaaaggctaacttaatggggtagggggcggattgggccgcggctgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04400
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161798605|gb|FC085777.1|FC085777
EST:     GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAG                         GGCTACCGCTTCGCCATGCCTCACTCCATACTCATGATGCACCACCCCTCG
genomic: GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAGgtgcgaggca ... cgcaccacagGGCTACCGCTTCGCCATGCCTCACTCCATCCTCATGATGCACCACCCCTCG
EST: gi|15698648|gb|BI722953.1|BI722953
EST:     GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAG                         GGCTACCGCTTCGCCATGCCTCACTCCATCCTCATGATGCACCACCCCTCG
genomic: GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAGgtgcgaggca ... cgcaccacagGGCTACCGCTTCGCCATGCCTCACTCCATCCTCATGATGCACCACCCCTCG
EST: gi|15692633|gb|BI716938.1|BI716938
EST:     GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAG                         GGCTACCGCTTCGCCATGCCT
genomic: GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAGgtgcgaggca ... cgcaccacagGGCTACCGCTTCGCCATGCCT
EST: gi|15693934|gb|BI718239.1|BI718239
EST:     GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAG                         GGCTACCGCTTCGCCATGCCTCACTCCATCCTCATGATGCACCACCCCTCG
genomic: GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAGgtgcgaggca ... cgcaccacagGGCTACCGCTTCGCCATGCCTCACTCCATCCTCATGATGCACCACCCCTCG
EST: gi|9461085|gb|BE453557.1|BE453557
EST:     GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAG                         GGCTACCGCTTCGCCATGCCTCACTCCATCCTCATGATGCACCACCCCTCG
genomic: GCCTGTGCCTGGGCATGGGCGGCTTCCTGCTCACCGCCGGCGGCGAGAAGgtgcgaggca ... cgcaccacagGGCTACCGCTTCGCCATGCCTCACTCCATCCTCATGATGCACCACCCCTCG