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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGATGTGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagctgagggcaactgaggaagccggaggcgctgggggctgtggaggggagcgtgcgaaggaaacgagtcttggggcactcatggcgggtttac...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09235
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808535|gb|FC097867.1|FC097867
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161816708|gb|FC102923.1|FC102923
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|14239204|gb|BG858020.1|BG858020
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAAGCTG-CCACCGAGGAGCTGTGCAA
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAA-GCTGGCCACCGAGGAGCTGTGCAA
EST: gi|14228408|gb|BG847224.1|BG847224
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161811869|gb|FC099166.1|FC099166
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161823421|gb|FC105743.1|FC105743
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|15367856|gb|BI527282.1|BI527282
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|34982977|gb|CF556894.1|CF556894
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|6544510|gb|AV390294.1|AV390294
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         NCCCAGGATGCG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCG
EST: gi|14238173|gb|BG856989.1|BG856989
EST:     GGAGGTGGAGGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: GGAGGTGGAGGG-CGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|49459088|gb|BP087001.1|BP087001
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|10777810|gb|AV634490.1|AV634490
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|14227781|gb|BG846597.1|BG846597
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCACAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|14237815|gb|BG856631.1|BG856631
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|34982976|gb|CF556893.1|CF556893
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161819144|gb|FC110442.1|FC110442
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|23362200|gb|BU650020.1|BU650020
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGNAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|34980880|gb|CF554867.1|CF554867
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCA-GATGCGTA
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTA
EST: gi|8514333|gb|BE122228.1|BE122228
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGNAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161807720|gb|FC096454.1|FC096454
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|14230350|gb|BG849166.1|BG849166
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGNAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|10770906|gb|AV621729.1|AV621729
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161791540|gb|FC078916.1|FC078916
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|34980875|gb|CF554865.1|CF554865
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|15702608|gb|BI726913.1|BI726913
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161821351|gb|FC109490.1|FC109490
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|10769465|gb|AV620290.1|AV620290
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|15702804|gb|BI727109.1|BI727109
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161792289|gb|FC080347.1|FC080347
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161792216|gb|FC079819.1|FC079819
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGATGTGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagctgagggcaactgaggaagccggaggcgctgggggctgtggaggggagcgtgcgaaggaaacgagtcttggggcactcatggcgggtttac

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgggttt