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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGAGAAGCTCGCCAAGACCGACCCGCCCGCCTTCATCTGCCACTACTACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgttgtcatcaggggctaggactgtgtgtgtatgagcatgagtcatgtggctcatcggcggcaggctggcagggtagggttgtgtcagcgagt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06362
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49459110|gb|BP087023.1|BP087023
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAA                         -GGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
EST: gi|14227126|gb|BG845942.1|BG845942
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAA                         -GGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
EST: gi|14238859|gb|BG857675.1|BG857675
EST:     AACTTTCTATTTCGCACACACCCGCCGGCGGCCGCATGATCGGGCA-CAA                         AG-TGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTTTACAAGTGG
genomic: AACTT-CTATTTCGCACACACC-GCCGGCGGCCGCATGATCGG-CAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGG
EST: gi|15370025|gb|BI529451.1|BI529451
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCA-CAA                         AGGTGTCCAGCATGCTGCTGGA
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGA
EST: gi|14238283|gb|BG857099.1|BG857099
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAA                         -GGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
EST: gi|16438093|gb|BM003313.1|BM003313
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAA                         -GGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
EST: gi|16072111|gb|BI874107.1|BI874107
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAA                         -GGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGNAGTTCTACAAGTGGC
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
EST: gi|15702530|gb|BI726835.1|BI726835
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAA                         -GGTGTCCAGCATGCTGCT
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCT
EST: gi|16071574|gb|BI873570.1|BI873570
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAA                         -GGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
EST: gi|10770350|gb|AV621175.1|AV621175
EST:     TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAA                         -GGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC
genomic: TACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgt ... gcacgtgcgcAGGTGTCCAGCATGCTGCTGGACGGCCAGACCCTGGAGTTCTACAAGTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTGGAGAAGCTCGCCAAGACCGACCCGCCCGCCTTCATCTGCCACTACTACAACTTCTATTTCGCACACACCGCCGGCGGCCGCATGATCGGCAACAAggtgcgtcgttgtcatcaggggctaggactgtgtgtgtatgagcatgagtcatgtggctcatcggcggcaggctggcagggtagggttgtgtcagcgagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgttgt
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggct
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgt