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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgcacgcaggcgggcagggggatgcgcaggcatagcggcccagaatgggatgggggtgcgagggctggcggctcgctgccaggggtggtggtg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09235
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808535|gb|FC097867.1|FC097867
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161816708|gb|FC102923.1|FC102923
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|14239204|gb|BG858020.1|BG858020
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|14228408|gb|BG847224.1|BG847224
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161811869|gb|FC099166.1|FC099166
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161823421|gb|FC105743.1|FC105743
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|10791023|gb|AV628389.1|AV628389
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|49463261|gb|BP091174.1|BP091174
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|15367856|gb|BI527282.1|BI527282
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|34982977|gb|CF556894.1|CF556894
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|34980878|gb|CF554866.1|CF554866
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|6544510|gb|AV390294.1|AV390294
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|14238173|gb|BG856989.1|BG856989
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|49459088|gb|BP087001.1|BP087001
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|14227781|gb|BG846597.1|BG846597
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|6547466|gb|AV393250.1|AV393250
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|14237815|gb|BG856631.1|BG856631
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|34982976|gb|CF556893.1|CF556893
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161819144|gb|FC110442.1|FC110442
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|23362200|gb|BU650020.1|BU650020
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|34980880|gb|CF554867.1|CF554867
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|8514333|gb|BE122228.1|BE122228
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161807720|gb|FC096454.1|FC096454
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|14230350|gb|BG849166.1|BG849166
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161791540|gb|FC078916.1|FC078916
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|34980875|gb|CF554865.1|CF554865
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|15702608|gb|BI726913.1|BI726913
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161821351|gb|FC109490.1|FC109490
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|15702804|gb|BI727109.1|BI727109
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161792289|gb|FC080347.1|FC080347
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
EST: gi|161792216|gb|FC079819.1|FC079819
EST:     ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCG                         CTTTTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA
genomic: ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgc ... gcgcacatagCTTCTTCTACGCCTCGTCCGCCTGCATCTACCCCGAGTACAAGCAGCTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGTGTCTTTCAACATGATGGAGGCGGCGCGCGTCACCGGCATCAAGCGgtgagagcgcacgcaggcgggcagggggatgcgcaggcatagcggcccagaatgggatgggggtgcgagggctggcggctcgctgccaggggtggtggtg

- - - - - - - -  GATGGA
- - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacgca
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggt