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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgggtggaggagagatgggagttttgagctccgcaaggctccatggggcggtacgcattcgagcagcgggcctcctgagcgtcatatggcatggcatgtccgactgcgacagacatatggactgcttgccagtttgccagctatctgactttctttcccccttcccttgtcgctgtcccttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06509
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161794925|gb|FC081124.1|FC081124
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|10781101|gb|AV637781.1|AV637781
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|14232389|gb|BG851205.1|BG851205
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|14235762|gb|BG854578.1|BG854578
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|49462222|gb|BP090135.1|BP090135
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCA
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCA
EST: gi|7686921|gb|AW757569.1|AW757569
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAG
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAG
EST: gi|49465264|gb|BP093177.1|BP093177
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|10772064|gb|AV622887.1|AV622887
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|14239140|gb|BG857956.1|BG857956
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|7616196|gb|AW721636.1|AW721636
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|10780696|gb|AV637376.1|AV637376
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|14237491|gb|BG856307.1|BG856307
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCAC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCAC
EST: gi|10191298|gb|BE761374.1|BE761374
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|161815613|gb|FC101806.1|FC101806
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|14237986|gb|BG856802.1|BG856802
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|15694359|gb|BI718664.1|BI718664
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|161794205|gb|FC081639.1|FC081639
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|161816715|gb|FC102930.1|FC102930
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|10769948|gb|AV620773.1|AV620773
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|22074644|gb|BQ823555.1|BQ823555
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|161810224|gb|FC098184.1|FC098184
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|14229151|gb|BG847967.1|BG847967
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGNCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|161813949|gb|FC104562.1|FC104562
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|10775362|gb|AV632042.1|AV632042
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|161804898|gb|FC089187.1|FC089187
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|161804532|gb|FC088847.1|FC088847
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|10780265|gb|AV636945.1|AV636945
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|7687795|gb|AW758441.1|AW758441
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|16073198|gb|BI875194.1|BI875194
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
EST: gi|7686812|gb|AW757460.1|AW757460
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCA
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCA
EST: gi|14240266|gb|BG859082.1|BG859082
EST:     ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG                         ATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC
genomic: ACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgg ... tcccttgcagATCGCCTACATGGCCTTCATCCTGCAGGCCCAGGCCACCGGCAAGGGCCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATGgtgagcccgggtggaggagagatgggagttttgagctccgcaaggctccatggggcggtacgcattcgagcagcgggcctcctgagcgtcatatggcatggcatgtccgactgcgacagacatatggactgcttgccagtttgccagctatctgactttctttcccccttcccttgtcgctgtcccttgcag

- - - - - - - -  CTGAAG
- - - - - - - - - - AAGGAG
- - - - - - - - - - - GGAGCT
- - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - AAGAAC