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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttcaggattgtagctgacaaagcagtcgctagcgggtctgcggcagtagcagtgcctgcaagagctggtagaggggcggcgtgacctccacaga...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06509
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161794925|gb|FC081124.1|FC081124
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|10781101|gb|AV637781.1|AV637781
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|14232389|gb|BG851205.1|BG851205
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|14235762|gb|BG854578.1|BG854578
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|16071953|gb|BI873949.1|BI873949
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|49462222|gb|BP090135.1|BP090135
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|7686921|gb|AW757569.1|AW757569
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|49465264|gb|BP093177.1|BP093177
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|22056453|gb|BQ812340.1|BQ812340
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTNCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAA
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAA
EST: gi|10772064|gb|AV622887.1|AV622887
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|14239140|gb|BG857956.1|BG857956
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|7616196|gb|AW721636.1|AW721636
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|10780696|gb|AV637376.1|AV637376
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|7413174|gb|AW651928.1|AW651928
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAG
EST: gi|14237491|gb|BG856307.1|BG856307
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|10191298|gb|BE761374.1|BE761374
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|161815613|gb|FC101806.1|FC101806
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|49468797|gb|BP096658.1|BP096658
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGT
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGT
EST: gi|14237986|gb|BG856802.1|BG856802
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|15694359|gb|BI718664.1|BI718664
EST:     CGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: CGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|161794205|gb|FC081639.1|FC081639
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|161816715|gb|FC102930.1|FC102930
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|10769948|gb|AV620773.1|AV620773
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTNG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|6551751|gb|AV397535.1|AV397535
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|22074644|gb|BQ823555.1|BQ823555
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|161810224|gb|FC098184.1|FC098184
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|14229151|gb|BG847967.1|BG847967
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|161813949|gb|FC104562.1|FC104562
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|10775362|gb|AV632042.1|AV632042
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|161804898|gb|FC089187.1|FC089187
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|161804532|gb|FC088847.1|FC088847
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|10780265|gb|AV636945.1|AV636945
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|7687795|gb|AW758441.1|AW758441
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|16073198|gb|BI875194.1|BI875194
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|7686812|gb|AW757460.1|AW757460
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: gi|14240266|gb|BG859082.1|BG859082
EST:     GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG                         GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttcaggattgtagctgacaaagcagtcgctagcgggtctgcggcagtagcagtgcctgcaagagctggtagaggggcggcgtgacctccacaga

- - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctgc