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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgatgctgttttgcacgtaattcgcaggcgaaagcattattcttatgtgtacctttcctggttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04400
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771579|gb|AV622402.1|AV622402
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGCCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|15371138|gb|BI530564.1|BI530564
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|16435224|gb|BM000444.1|BM000444
EST:     CACGACAAATACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|10789074|gb|AV626794.1|AV626794
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|22049140|gb|BQ808589.1|BQ808589
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCATGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|15701789|gb|BI726094.1|BI726094
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|8287530|gb|BE025089.1|BE025089
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|14232434|gb|BG851250.1|BG851250
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|8287522|gb|BE025081.1|BE025081
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|161798605|gb|FC085777.1|FC085777
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|10773922|gb|AV624745.1|AV624745
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGTAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|15692633|gb|BI716938.1|BI716938
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|10790307|gb|AV627673.1|AV627673
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|10773312|gb|AV624135.1|AV624135
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
EST: gi|10771339|gb|AV622162.1|AV622162
EST:     CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG                         CAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA
genomic: CACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgat ... ctggttgcagCAAACGTGGTGGGCAAGAAGTCCCCACAGGGCTTTTGGCAGGTCACGACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAGgtgcgttgatgctgttttgcacgtaattcgcaggcgaaagcattattcttatgtgtacctttcctggttgcag

- - - - - - - - - - - - - - - - - - - -  TGAAGC