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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCCGGCGTTGTTGCCCCTGAGTACCTGAAGGGCGACCTGGCCGGCGACTACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcgggagctaaaatgcctcattaaccttggaatccttcatattactttctctcttgacgggcgacgggattcgtcagcaaaatttgggcaaagct...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06509
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10776175|gb|AV632855.1|AV632855
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|49464448|gb|BP092361.1|BP092361
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|10776540|gb|AV633220.1|AV633220
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|14232389|gb|BG851205.1|BG851205
EST:     GCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: GCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|16071953|gb|BI873949.1|BI873949
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|7686921|gb|AW757569.1|AW757569
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|6542648|gb|AV388432.1|AV388432
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|22056453|gb|BQ812340.1|BQ812340
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|49459920|gb|BP087833.1|BP087833
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|7413174|gb|AW651928.1|AW651928
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|6542694|gb|AV388478.1|AV388478
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|7427270|gb|AW661436.1|AW661436
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|14237491|gb|BG856307.1|BG856307
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|10191298|gb|BE761374.1|BE761374
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|49462508|gb|BP090421.1|BP090421
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|7687830|gb|AW758476.1|AW758476
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|6547139|gb|AV392923.1|AV392923
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|161815613|gb|FC101806.1|FC101806
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCCATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|49461907|gb|BP089820.1|BP089820
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|34992602|gb|CF566519.1|CF566519
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|14237986|gb|BG856802.1|BG856802
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|161794205|gb|FC081639.1|FC081639
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCCATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|10781376|gb|AV638056.1|AV638056
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|49464283|gb|BP092196.1|BP092196
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|6543738|gb|AV389522.1|AV389522
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGG
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGG
EST: gi|6547418|gb|AV393202.1|AV393202
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|14229151|gb|BG847967.1|BG847967
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|161813949|gb|FC104562.1|FC104562
EST:     CTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCCATGCTGGGTGTTGC
genomic: CTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|6544286|gb|AV390070.1|AV390070
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|161804898|gb|FC089187.1|FC089187
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCCATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|23364469|gb|BU652289.1|BU652289
EST:     TACGGCTGGGACCCTCTCGGTCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|10778438|gb|AV635118.1|AV635118
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|161804532|gb|FC088847.1|FC088847
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCCATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
EST: gi|7686812|gb|AW757460.1|AW757460
EST:     TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTG                         GTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC
genomic: TACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcggg ... gcctgtgcagGTACCGCCAGTCGGAGCTGCAGCACGCTCGCTGGGCGATGCTGGGTGTTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCCGGCGTTGTTGCCCCTGAGTACCTGAAGGGCGACCTGGCCGGCGACTACGGCTGGGACCCTCTCGGCCTGGGCGCTGACCCCACCGCTCTGAAGTGgtgcgtcgggagctaaaatgcctcattaaccttggaatccttcatattactttctctcttgacgggcgacgggattcgtcagcaaaatttgggcaaagct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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