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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCATTGACGCGCCCTCTGCGTTGGTTGCATCGGCTCTTAAGTCGCTCGGCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttccgccgtctcacaggcctcgtgcgcgtagtgccgccgacccaggagcggtcgcccactgtttcgttcgagcggtcatcgccaacgcgattgtgtcctgccctgatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04622
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15691801|gb|BI716106.1|BI716106
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|23361012|gb|BU648832.1|BU648832
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|22076502|gb|BQ825278.1|BQ825278
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|22070752|gb|BQ820090.1|BQ820090
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|15698196|gb|BI722501.1|BI722501
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|22048721|gb|BQ808345.1|BQ808345
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|15694100|gb|BI718405.1|BI718405
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|15701008|gb|BI725313.1|BI725313
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|23360242|gb|BU648062.1|BU648062
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|15697452|gb|BI721757.1|BI721757
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCG
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCG
EST: gi|15699673|gb|BI723978.1|BI723978
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|49470946|gb|BP098807.1|BP098807
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAG
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAG
EST: gi|15701009|gb|BI725314.1|BI725314
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
EST: gi|15697341|gb|BI721646.1|BI721646
EST:     GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAG                         CTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC
genomic: GCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttcc ... cctgatgcagCTTTCGGTGCTTCAAGGCGAGGTAGACCGCCTACACAAGCTACTCTCAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCATTGACGCGCCCTCTGCGTTGGTTGCATCGGCTCTTAAGTCGCTCGGCAACGACACCGGATACAGCCCGTCCCCCAGCGGGCGAGGAGGCAGCGAGgtaggtttccgccgtctcacaggcctcgtgcgcgtagtgccgccgacccaggagcggtcgcccactgtttcgttcgagcggtcatcgccaacgcgattgtgtcctgccctgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG