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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacctaccctgtcctgttagccttttgttgtctcgataactaccagtctcttgaggttttcattgtctgcttcactttatttaagtgttaattttttttcttggttttctttttatcttttcctcgcccattag

Basic information

species Arabidopsis thaliana
transcript AT2G26000.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116413542|gb|EG456134.1|EG456134
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413539|gb|EG456131.1|EG456131
EST:     GAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: GAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413535|gb|EG456127.1|EG456127
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413537|gb|EG456129.1|EG456129
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413543|gb|EG456135.1|EG456135
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413540|gb|EG456132.1|EG456132
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413534|gb|EG456126.1|EG456126
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413533|gb|EG456125.1|EG456125
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413544|gb|EG456136.1|EG456136
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413528|gb|EG456120.1|EG456120
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413525|gb|EG456117.1|EG456117
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413541|gb|EG456133.1|EG456133
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: gi|116413545|gb|EG456137.1|EG456137
EST:     TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA                         TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC