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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATATGGTTGCGGCATATGGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGgtatctagcaatattggttcttgactcgtcgcgtttcatgtctttcttacataagtccacacagagattctgaaactggaattgtttcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G07010.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G07010.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv06s0004g07390.t01 (Vitis vinifera), 5'ss of exon 8
TGAATATGGTTGCGGCATATGGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGgtatctagcaatatt--ggttcttgactcgtcgcgtttcatgtctttc--ttacataagtccacacag----agattctgaa-actggaattgtttcttcag
| |||||| |||  | |||||| |  ||||||| |||||||||||||| |||||| | || ||||||||||||    | | |  |  | |||     | |     |||  ||   | |    | | |   ||||  |     |  | ||||| |     ||  ||| | |  
TAAATATGATTGTAGTATATGGCGTATTGATGTGGGAATGTCCAGTGGAGTTCTTAATTCAAGACCAGAGgtaaactgaacttcttagtttcccattttgaaaaattttgtgagatccaacaaaacataaccacttaatatcatttcctgaagatcttgatcttttatcc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085928|gb|DR381687.1|DR381687
EST:     GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAG                         GTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
genomic: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGgtatctagca ... gtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
EST: gi|125154760|gb|EL185220.1|EL185220
EST:     TGGTGTTCTTGACTCTAGACCAGAG                         GTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
genomic: TGGTGTTCTTGACTCTAGACCAGAGgtatctagca ... gtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
EST: gi|116461227|gb|EG503819.1|EG503819
EST:     GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAG                         GTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
genomic: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGgtatctagca ... gtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
EST: gi|116396060|gb|EG438652.1|EG438652
EST:     GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAG                         GTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC
genomic: GGAGAGTTGATGTAGGAATGTCCAGTGGTGTTCTTGACTCTAGACCAGAGgtatctagca ... gtttcttcagGTTCTGGAGATAAGAGGGGACAAAGCTAGAGTAATAAGGAGCAACCGTGAC