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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcagtctcatatccaactacagaacagattattgtaatcagtagtgagttttgattcgaactcttttcccag

Basic information

species Arabidopsis thaliana
transcript AT4G37930.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G37930.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 8
ATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgt-aatttcagt-ctcatatccaactacagaac---agattattgtaatcagtagtgagttttgattcgaactcttttcccag
||||||||||||||   |||||| |||||||| ||||| ||||| ||||||||||| |||||  |  | |||||||||| ||||||  | ||||| ||||| | | ||||        | | |||        |  ||||||||||       ||   ||   |  |  |   |||
ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaatcagtcaaataattcacttgttatgcaatctgcag

upper sequence: AT4G37930.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 8
ATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaa-------tttca-------gtctcatatccaa----ctacagaac---agattattgta--------atcagtagtgagttttgattcgaactcttttcccag---------------------------------------
 |||||||||| |||  |||||| |||||||| |||||  |||||||||||||||| |||||| |  | ||||| |||| ||| ||  | |||| ||       || ||        | |  | |||||    | |  || |   | |||||| ||        | |  ||  ||   ||||  ||   ||||||                                            
TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAAGTGCATATGCTCGGCTATATGATTATGACCGTATGCGGAAGgcaaggtttctttccacgatagtattttttctccaagatgcaagggagctgcacattattatattacagagaactatacagaacattgaaccgcgatctttttttttttatcaatcaaataattccataatgttatgtgtcgacag

upper sequence: AT4G37930.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 8
ATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgta-atttcagtctcatatccaa-----ctacagaacagattattgtaatcagtagtgagttttgat----tcgaactcttttcccag----------------------------------------------------------------
||||||||||| ||   ||||| ||||||||||||||| || |||||||| ||||| |||||| |    || |||||||| || ||  | |||||   ||| | | | || |          | ||  |      |||| | ||| | ||  ||||  |     |     |   |  ||                                                                  
ATGGAGAAAAGCGCAGTTCTTTACAGGCCAAAATTGATAGTAGCTGGTGCCAGTGCCTATGCTCGCCATTACGACTATGCTCGTATGCGCAAGgtgtgtttaaatttgatgtttgcggcctttgcattatgtgaaattgca-tcatttgtatgtttctacagtgtaatgttaactatccgatactctactgtgtacctgctccttcgagttcatatgtgatctgcaaattgtctttctcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125174121|gb|EL195227.1|EL195227
EST:     ATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
genomic: ATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
EST: gi|152033809|gb|BP816571.2|BP816571
EST:     GTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACANATCAGT
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
EST: gi|124817152|gb|EH902018.1|EH902018
EST:     TGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAG
genomic: TGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAA-GCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAG
EST: gi|124717107|gb|EH808509.1|EH808509
EST:     TGGTGCAAGTGCTTATGCTAGATTGTATGACTATGACCCGCATCAGAAAG                         GTCTGTAACAAGCA
genomic: TGGTGCAAGTGCTTATGCTAGATTGTATGACTATG-CCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCA
EST: gi|125031704|gb|EL103973.1|EL103973
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAA
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAA
EST: gi|86042971|gb|DR338726.1|DR338726
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATAAGGCACACATCAGT
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
EST: gi|125176816|gb|EL196117.1|EL196117
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAA
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAA
EST: gi|125193994|gb|EL208948.1|EL208948
EST:     AGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
genomic: AGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
EST: gi|116443767|gb|EG486359.1|EG486359
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
EST: gi|124731062|gb|EH822464.1|EH822464
EST:     GCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
genomic: GCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGT
EST: gi|124932356|gb|EL009624.1|EL009624
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAG
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAG
EST: gi|125209579|gb|EL224533.1|EL224533
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATG
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATG
EST: gi|125116701|gb|EL166137.1|EL166137
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAA
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAA
EST: gi|125315844|gb|EL329929.1|EL329929
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAA
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAA
EST: gi|116428932|gb|EG471524.1|EG471524
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACAC
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACAC
EST: gi|124785637|gb|EH875316.1|EH875316
EST:     CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAG                         GTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATAT
genomic: CTGGTGCAAGTGCTTATGCTAGATTGTATGACTATGCCCGCATCAGAAAGgtaatttcag ... cttttcccagGTCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATAT