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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGTCATCGCAGCAACTGATGGGCTCTTTGATAACTTATACGAAAAAGAAATCGTTTCAATAGTTTGCGGGTCACTGAAACAGAGTCTGGAACCTCAGgtgctcaatggtcttgaattatctcctctttttggttgaacaagtagtttcggcgggtgttagttgtgtacgagtcacttagctctcgttttcaaatggttttgagatgaaatgtgctgttatcaatgtgttggggatatatgagtttgattaatgtttgtgcggtgtaacag

Basic information

species Arabidopsis thaliana
transcript AT4G33500.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125005524|gb|EL077793.1|EL077793
EST:     AATCGTTTCAATTAGTTTGCGGGTCACTGAAACAGAGTCTGGAACCTCAG                         AAAATAGCAGAGTTGGTAGCTGCAAAAGCACAAGAAG
genomic: AATCGTTTCAA-TAGTTTGCGGGTCACTGAAACAGAGTCTGGAACCTCAGgtgctcaatg ... ggtgtaacagAAAATAGCAGAGTTGGTAGCTGCAAAAGCACAAGAAG
EST: gi|86087663|gb|DR383422.1|DR383422
EST:     AAATCGTTTCAATAGTTTGCGGGTCACTGAAACAGAGTCTGGAACCTCAG                         AAAATAGCAGAGTTGGTAGCTGCAAAAGCACAAGAAGTAGGACGATCTAAG
genomic: AAATCGTTTCAATAGTTTGCGGGTCACTGAAACAGAGTCTGGAACCTCAGgtgctcaatg ... ggtgtaacagAAAATAGCAGAGTTGGTAGCTGCAAAAGCACAAGAAGTAGGACGATCTAAG
EST: gi|164094125|gb|ES158537.1|ES158537
EST:     CACTGAAACAGAGTCTGGAACCTCAG                         AAAATAGCAGAGTTGGTAGCTGCAAAAGCACAAGAAGTAGGACGATCTAAG
genomic: CACTGAAACAGAGTCTGGAACCTCAGgtgctcaatg ... ggtgtaacagAAAATAGCAGAGTTGGTAGCTGCAAAAGCACAAGAAGTAGGACGATCTAAG