1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAAAGAAAGGAAGGTTCCATCACTCAAGCTTTTTGGCTGGAGGAGCTACATTAGCTGCTGGGAGGGTGATTGTTGACAATGGAGTTCTCAAGgtaacttactaaggccacgtccttttcttagagtggttgagatacatgttcattcatatcaacttttttattatgtctgccttctgtgatttctctgtttgatcgttctgttttcggtttaatctcag
species | Arabidopsis thaliana |
transcript | AT3G52870.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGCTACATTAGCTGCTGGGAGGGTGATTGTTGACAATGGAGTTCTCAAG ACAATCTCTGCATATAGCGGACATTACAGGCCGTCAGACGATAGTCTCGACEST: gi|164110400|gb|ES007609.1|ES007609
genomic: GAGCTACATTAGCTGCTGGGAGGGTGATTGTTGACAATGGAGTTCTCAAGgtaacttact ... ttaatctcagACAATCTCTGCATATAGCGGACATTACAGGCCGTCAGACGATAGTCTCGAC
EST: TTGTTGACAATGGAGTTCTCAAG ACAATCTCTGCATATAGCGGACATTACAGGCCGTCAGACGATAGTCTCGACEST: gi|125083734|gb|EL144191.1|EL144191
genomic: TTGTTGACAATGGAGTTCTCAAGgtaacttact ... ttaatctcagACAATCTCTGCATATAGCGGACATTACAGGCCGTCAGACGATAGTCTCGAC
EST: GAGCTACATTAGCTGCTGGGAGGGTGATCGTTGACAATGGAGTTCTCAAG ACAATCTCTGCATATAGCGGEST: gi|125221475|gb|EL235560.1|EL235560
genomic: GAGCTACATTAGCTGCTGGGAGGGTGATTGTTGACAATGGAGTTCTCAAGgtaacttact ... ttaatctcagACAATCTCTGCATATAGCGG
EST: GAGCTACATTAGCTGCTGGGAGGGTGATTGTTGACAATGGAGTTCTCAAG ACAATCTCTGCATAT
genomic: GAGCTACATTAGCTGCTGGGAGGGTGATTGTTGACAATGGAGTTCTCAAGgtaacttact ... ttaatctcagACAATCTCTGCATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGAAAGGAAGGTTCCATCACTCAAGCTTTTTGGCTGGAGGAGCTACATTAGCTGCTGGGAGGGTGATTGTTGACAATGGAGTTCTCAAGgtaacttactaaggccacgtccttttcttagagtggttgagatacatgttcattcatatcaacttttttattatgtctgccttctgtgatttctctgtttgatcgttctgttttcggtttaatctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT