1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGCTGTCAAATCTAAGCGTGACTACTTGAGGCATCGCAGTAGTTTCAGCTGGTTGTATCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAGgttattgccttcttccactaatgtaacactattcttgtgggtgtatcatctttttattttatttttggcctaatgtttgtttggcttctgggtgagcag
species | Arabidopsis thaliana |
transcript | AT3G51270.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAG GCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGAEST: gi|125204824|gb|EL219778.1|EL219778
genomic: TCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAGgttattgcct ... gggtgagcagGCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGA
EST: AGTTTGCTTTTATGAAG GCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGA
genomic: AGTTTGCTTTTATGAAGgttattgcct ... gggtgagcagGCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGTCAAATCTAAGCGTGACTACTTGAGGCATCGCAGTAGTTTCAGCTGGTTGTATCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAGgttattgccttcttccactaatgtaacactattcttgtgggtgtatcatctttttattttatttttggcctaatgtttgtttggcttctgggtgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG