1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGGTTCCTCTTAAACTTCTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGgtacataatcttttcttatctttcgcttaggttcttactgtatcatggatgtaatatttctatataatatggtctgatttttttctgtgttgttctcag
species | Arabidopsis thaliana |
transcript | AT5G44070.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGG GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTEST: gi|124730079|gb|EH821481.1|EH821481
genomic: CTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGgtacataatc ... ttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
EST: AGGGAAACGTAGAGG GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTEST: gi|124747959|gb|EH838089.1|EH838089
genomic: AGGGAAACGTAGAGGgtacataatc ... ttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
EST: CTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGG GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACEST: gi|163982803|gb|ES096721.1|ES096721
genomic: CTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGgtacataatc ... ttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATAC
EST: GTCAACAGGGAAACGTAGAGG GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
genomic: GTCAACAGGGAAACGTAGAGGgtacataatc ... ttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGGTTCCTCTTAAACTTCTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGgtacataatcttttcttatctttcgcttaggttcttactgtatcatggatgtaatatttctatataatatggtctgatttttttctgtgttgttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA