1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTGATCCTAGACACCGGTATGGACACAACCTGCATAAATACTATGAAGAATGGTGTAAAGCTGATGCTGGTCAGCCATTCTTTTACTGgtatgcttaaaatcttaggttcatttagttagtgttttcttgtagctcaagaatcttttttaggtgataattcttatctataactttgtgatatatccgggttttttttttttggcag
species | Arabidopsis thaliana |
transcript | AT3G52870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TACTATGAAGAATGGTGTAAAGCTGATGCTGGTCAGCCATTCTTTTACTG GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAAEST: gi|164120502|gb|ES004844.1|ES004844
genomic: TACTATGAAGAATGGTGTAAAGCTGATGCTGGTCAGCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAA
EST: GCCATTCTTTTACTG GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTCEST: gi|164123798|gb|ES163166.1|ES163166
genomic: GCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
EST: GCCATTCTTTTACTG GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTCEST: gi|125265947|gb|EL280032.1|EL280032
genomic: GCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
EST: CTGGTCAGCCATTCTTTTACTG GTTGGATGTTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTEST: gi|125184291|gb|EL199245.1|EL199245
genomic: CTGGTCAGCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATG-TTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGT
EST: GTAAAGCTGATGCTGGTCAGCCATTCTTTTACTG GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTCEST: gi|124929544|gb|EL007079.1|EL007079
genomic: GTAAAGCTGATGCTGGTCAGCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
EST: ATTCTTTTACTG GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
genomic: ATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATCCTAGACACCGGTATGGACACAACCTGCATAAATACTATGAAGAATGGTGTAAAGCTGATGCTGGTCAGCCATTCTTTTACTGgtatgcttaaaatcttaggttcatttagttagtgttttcttgtagctcaagaatcttttttaggtgataattcttatctataactttgtgatatatccgggttttttttttttggcag
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG