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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAGCACCATTGATGATTTCCGCAAATTTGTCGTCAAATGCACGAGTTCTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGgtaaagcataactttgtacacactgttttgctaaggctcagtcatattttcaagttttaaaacgtctggtggctataattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G44070.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124931458|gb|EL008813.1|EL008813
EST:     ATATGATCTCAACATATCACCGAGGTGTATTTAAGCAG                         ACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT
genomic: ATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGgtaaagcata ... ataattgcagACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT
EST: gi|86043106|gb|DR338861.1|DR338861
EST:     CTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAG                         ACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT
genomic: CTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGgtaaagcata ... ataattgcagACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT
EST: gi|86051294|gb|DR347049.1|DR347049
EST:     CTGAGAATTGCCATATGATCTCAACATATCACAGAGGTGTATTTAAGCAG                         ACTGGGACTGGTCACTTTTCAC
genomic: CTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGgtaaagcata ... ataattgcagACTGGGACTGGTCACTTTTCAC