1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGgtcggttcatcttcaattgcatttctctatcacagagctataatcagaatgtgtatcgatctttgtagagtttatagtcttggtgaacctgattggaatctctcattgtttgaaatcctttttgacttattttgctctggtgtatctaatag
species | Arabidopsis thaliana |
transcript | AT2G46230.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCGTGTTTTTGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAG ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTEST: gi|86051135|gb|DR346890.1|DR346890
genomic: ACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGgtcggttcat ... tatctaatagATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT
EST: ACCGTGTTTTTGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAG ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTEST: gi|86051133|gb|DR346888.1|DR346888
genomic: ACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGgtcggttcat ... tatctaatagATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT
EST: ACCGTGTTTTTGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAG ATCGATCTTGAGAAGGGA-TGAGAGACTGTCTGTACGCAAATTEST: gi|86051134|gb|DR346889.1|DR346889
genomic: ACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGgtcggttcat ... tatctaatagATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT
EST: ACCGTGTTTTTGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAG ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT
genomic: ACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGgtcggttcat ... tatctaatagATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGgtcggttcatcttcaattgcatttctctatcacagagctataatcagaatgtgtatcgatctttgtagagtttatagtcttggtgaacctgattggaatctctcattgtttgaaatcctttttgacttattttgctctggtgtatctaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA