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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagccttccctatctttttttcttaatctttattcctgctggcttcctgtaatcctgttgcaagcgtttctataaagatgttatgataagtatatatg...

Basic information

species Arabidopsis thaliana
transcript AT1G17280.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 3
GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagcc--ttccctatctttttttcttaatctttattcctgctggcttcctgtaatc---ctgttgcaagcgtttctataaagatgttatgataagtatatatg
|| ||||| || |||||||| ||||||||||| |||| ||| ||||| ||||||||||||    || | ||   ||   | |      |||||  |||||   ||   |  ||     |  | ||  | || | |  |    ||   |||   |||    
GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCgtaagtttgtttcatactgttacatttcttatattatttatgctgagctctcatgttcagaaagaagaaaaagattatgttgaacccttgctatat-cata----

upper sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G01680.2 (Glycine max), 5'ss of exon 3
GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagcct---tccctatctttttttcttaatctttattcctgctggcttcctgtaatcc-tgttgcaagcgtttctataaagatgttatgataagtatatatg
|| ||||| || |||||||| ||||||||||| || | ||| ||||| ||||||||||||  |   || |  | ||   ||  | || || |||  || |    ||   |  ||         |       |||   ||   | |||||  |  ||   
GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgtttcacactgttccatttcttatattaatttatgttaagctctaatgttcagcaagaagaaaaagattatgttgaacctttgatatat-cat---

upper sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 5'ss of exon 4
GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagccttccctatctttttttcttaatctt-tattcctgctgg--cttcctgtaatcctgttgcaagcgtttctataaagatgttatgataagtatatatg
|||||||| |||||||| ||||| || |||||||||||||| ||||| ||||||||||||      |||||| | | ||||    || || | |   |     ||||| | |         || | |||||| | |   | |||  |  | ||  || 
GAACCAGTTTCCCATGTGGTTGCCCGCCCTTCCCCAAATGATATTCTTGAGTGGCgtaagttgcatctatctctatctctttgctttctacttcaattaaattttccttttagagaaactgaaccttttctagataag-gctatactgtg-attgat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86056971|gb|DR352728.1|DR352728
EST:     AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC                         ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
genomic: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagccttc ... aatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
EST: gi|116477746|gb|EG520338.1|EG520338
EST:     AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC                         ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
genomic: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagccttc ... aatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
EST: gi|86056972|gb|DR352729.1|DR352729
EST:     AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC                         ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
genomic: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagccttc ... aatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
EST: gi|125117165|gb|EL166417.1|EL166417
EST:     TTCTCGAGTGGC                         ATCATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
genomic: TTCTCGAGTGGCgtaagccttc ... aatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG