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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAGgtatctttctgaaatatttggtaagatttattcatttctatctcacgttggtgccgttcgtgatcacattgtatttgaaagttgtatgttttacgaattattcag

Basic information

species Arabidopsis thaliana
transcript AT5G20040.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86052818|gb|DR348575.1|DR348575
EST:     ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAG                         GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG
genomic: ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAGgtatctttct ... aattattcagGTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG
EST: gi|86052820|gb|DR348577.1|DR348577
EST:     ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAG                         GTGGTGCCTCDNCATCTTATCTACATTTTGCATCCGTCTCAAG
genomic: ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAGgtatctttct ... aattattcagGTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG
EST: gi|86052816|gb|DR348573.1|DR348573
EST:     ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAG                         GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGACTACTCT
genomic: ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAGgtatctttct ... aattattcagGTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGACTACTCT
EST: gi|86052814|gb|DR348571.1|DR348571
EST:     ATAAAGGSCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAG                         GTGGTRCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG
genomic: ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAGgtatctttct ... aattattcagGTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG
EST: gi|86052822|gb|DR348579.1|DR348579
EST:     ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAG                         GTGGTGCCTCAATCATCTTATCGA
genomic: ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAGgtatctttct ... aattattcagGTGGTGCCTCA-TCATCTTATCGA
EST: gi|86052817|gb|DR348574.1|DR348574
EST:     ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAG                         GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG
genomic: ATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAGgtatctttct ... aattattcagGTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG