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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAGgtataatgtcttaggggcttggatttacttaaaaactgaaactttttcttaatctgagttatgaaaagccaaaatgaaacccaattttagcagagattatcaattgaaatggctattttatgtttactgtgtcag

Basic information

species Arabidopsis thaliana
transcript AT2G33400.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125261501|gb|EL275586.1|EL275586
EST:     TTCAGCACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAG                         GAGTGAGGTAGGGGAGGAGG
genomic: TTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAGgtataatgtc ... actgtgtcagGAGTGAGGTAGGGGAGGAGG
EST: gi|116401463|gb|EG444055.1|EG444055
EST:     TTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAG                         GAGTGAGGTAGGGGAGG
genomic: TTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAGgtataatgtc ... actgtgtcagGAGTGAGGTAGGGGAGG