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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTAGAGGCTGATGCTGGGTTTCTTGTGCGTGACACTCTTGTGTTTGTGTGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAGAGgttagttcatactttatttctttcttaaacattgtaattatgttactaaacattacattatggaactattgttttggcctttatttttag

Basic information

species Arabidopsis thaliana
transcript AT2G25330.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 3
TATGTTAGAGGCTGATGCTGGGTTTCTTGTGCGTGACACTCTTGTGTTTGTGTGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAGAGgttagttcatactttatttctttcttaaacattgtaattatgttactaaacattacattatgga-----actattgttttggcct---ttatttttag---
||||||||| || ||||| || |||||||| ||||||||| |||| ||||| ||||||||||||||||| || ||||||||||||||||||||  ||||||| ||| | ||    ||| |||   |     || |  || | |    ||  ||||| | || ||     | ||||  | |  | |     ||||||     
TATGTTAGAAGCAGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGgtaagtccttatgggattgcttgtctctgtgttatc-ttgtctatacaactattacttgatagatgtcaaatattcctctctcttgccccattttttctat

upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G07050.1 (Glycine max), 5'ss of exon 3
TATGTTAGAGGCTGATGCTGGGTTTCTTGTGCGTGACACTCTTGTGTTTGTGTGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAGAGgttagttcatactttatttctttcttaaacattgtaattatgttactaaacattacattatgga--------actattgttttggcctttatttttag---
|||||| ||  | ||||| || |||||||| ||||||||| |||| ||||| ||||||||| ||||||| || ||||||||||||||||||||  ||||||| ||| | ||    ||| |||   |     || |  || |      ||  ||||| | || ||        | | |   | | |||    |||||     
TATGTTGGAATCGGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATACTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGgtaagtccttatgggattgcttgtctctgtgttatc-ttgtacgtacaactattacttgatagatgccaaatattctctctcttgccccattttttgattt

upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0008g05690.t01 (Vitis vinifera), 5'ss of exon 3
TATGTTAGAGGCTGATGCTGGGTTTCTTGTGCGTGACACTCTTGTGTTTGTGTGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAGAGgttagttcatact--ttatttctttcttaaacattgtaattatgttactaaacattacattatggaactattgt--tttggcctttatttttag-------
|||| | ||||| ||||| || |||||||| ||||||||  |||| ||||| |||||||| |||||||| ||||| ||||| || |||||||||||||||||||||  ||      || || |||||  |   |      ||| |||  | |  ||   | |||    ||  ||  ||       | ||  | |       
TATGCTGGAGGCAGATGCAGGATTTCTTGTACGTGACACAGTTGTTTTTGTTTGTGAAATCTTGGATTGCTGTCCGTGGTTCGAATTTTCAGACCTAGAGgttagtatatgtgggctaattttttctatatgttccctgctat-ttatgataagttttttcatgttcttacagtgattcaaaacctgttaattgtgaattt

upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S86_237V6.1 (Physcomitrella patens), 5'ss of exon 3
TATGTTAGAGGCTGATGCTGGGTTTCTTGTGCGTGACACTCTTGTGTTTGTGTGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAGAGgttag---ttcatactt-tatttctttcttaaac--attgtaattat--gttactaaacattacattatggaactattgttttggcctttatttttag--------
       ||||| ||||| |||||| | |  || |||||  | |||||||||||||| ||| |||| || || || |||||||||||||| ||||| ||||| ||   | ||      | ||  |   |   ||  || ||    |   |||   | | |  |  ||   |   | | ||        |        |        
------GGAGGCGGATGCCGGGTTTGTGGCCCGAGACACGGTCGTGTTTGTGTGTGAGATACTGGACTGCTGCCCATGGTTTGAGTTTTCTGACCTGGAGGTGAGAgctccacggaggtgttaatacgtcggactgatggtttgcagcggttgtgagagagcaggttggagggatgtggtacccatggtagagacagggtcgagga