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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaacatctatagacaatacaaccccctgctttgttggttatataataaaacacctactaaatcggttattcacactctcag

Basic information

species Arabidopsis thaliana
transcript AT2G26000.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116413542|gb|EG456134.1|EG456134
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413539|gb|EG456131.1|EG456131
EST:     GGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCACATGGATGGTGAGAGTGAAGTCTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413535|gb|EG456127.1|EG456127
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413537|gb|EG456129.1|EG456129
EST:     GGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTTTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413543|gb|EG456135.1|EG456135
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413540|gb|EG456132.1|EG456132
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTTTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413534|gb|EG456126.1|EG456126
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAG
EST: gi|116413533|gb|EG456125.1|EG456125
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413544|gb|EG456136.1|EG456136
EST:     AGAGGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTTTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413528|gb|EG456120.1|EG456120
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413525|gb|EG456117.1|EG456117
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTTTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413541|gb|EG456133.1|EG456133
EST:     AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
EST: gi|116413545|gb|EG456137.1|EG456137
EST:     AGAGGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAG                         CTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG
genomic: AGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaac ... acactctcagCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGgtaaagaaacatctatagacaatacaaccccctgctttgttggttatataataaaacacctactaaatcggttattcacactctcag

- - - - - - - - -  GCAAAG
- - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - -  AAGAAC