1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAGATACCAAAACAAGCAGTGAAAAATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacggatcaagtttcgatttcatggattgcgattataaactaggtttttggttacgcgaatttttctgtggttctgatgaatcacgatctccaga...
species | Arabidopsis thaliana |
transcript | AT5G44070.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAG CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGGEST: gi|86051282|gb|DR347037.1|DR347037
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAG CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGGEST: gi|124796246|gb|EH885925.1|EH885925
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: CTTCTCCTCCGGCCATTGACTTTTTCTTCCGCCGAAGGCAAG CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGGEST: gi|86051284|gb|DR347039.1|DR347039
genomic: CTTCTCCTCCGGCCATTGAC-TTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAA--SRAG CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGGEST: gi|86051290|gb|DR347045.1|DR347045
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAG CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGGEST: gi|86051294|gb|DR347049.1|DR347049
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCG-A--MVAG CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGGEST: gi|124858990|gb|EH943427.1|EH943427
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAG CTAATCTTCAA
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGATACCAAAACAAGCAGTGAAAAATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacggatcaagtttcgatttcatggattgcgattataaactaggtttttggttacgcgaatttttctgtggttctgatgaatcacgatctccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgatctcc