Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATACCAAAACAAGCAGTGAAAAATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacggatcaagtttcgatttcatggattgcgattataaactaggtttttggttacgcgaatttttctgtggttctgatgaatcacgatctccaga...

Basic information

species Arabidopsis thaliana
transcript AT5G44070.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051291|gb|DR347046.1|DR347046
EST:     GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAG                         CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: gi|86051282|gb|DR347037.1|DR347037
EST:     GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAG                         CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: gi|124796246|gb|EH885925.1|EH885925
EST:     CTTCTCCTCCGGCCATTGACTTTTTCTTCCGCCGAAGGCAAG                         CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
genomic: CTTCTCCTCCGGCCATTGAC-TTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: gi|86051284|gb|DR347039.1|DR347039
EST:     GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAA--SRAG                         CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: gi|86051290|gb|DR347045.1|DR347045
EST:     GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAG                         CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: gi|86051294|gb|DR347049.1|DR347049
EST:     GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCG-A--MVAG                         CTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGATTTTTCAGG
EST: gi|124858990|gb|EH943427.1|EH943427
EST:     GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAG                         CTAATCTTCAA
genomic: GATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacgg ... tttgtggcagCTAATCTTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGATACCAAAACAAGCAGTGAAAAATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCTCCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGgtacgtacggatcaagtttcgatttcatggattgcgattataaactaggtttttggttacgcgaatttttctgtggttctgatgaatcacgatctccaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgatctcc