1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...ggcatgagaatccttttgaattcctttgtcatttacgtgaataactaagttttgccatgtacatgccactgtgagcttactacctatttcccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTTCTTCCACTGTTGAAGCGCCTTGATGATTGTATCTC
species | Zea mays |
transcript | GRMZM5G825854_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTTEST: gi|211066409|gb|FL073783.1|FL073783
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
EST: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTTEST: gi|148952057|gb|EC897846.2|EC897846
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
EST: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTTEST: gi|91872014|gb|EB401971.1|EB401971
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
EST: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTTEST: gi|32859413|gb|CD999094.1|CD999094
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
EST: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAAT GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
genomic: TTGCAGAGGCACTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATgtaaggtttg ... ccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTT
taagttttgccatgtacatgccactgtgagcttactacctatttcccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTTCTTCCACTGTTGAAGCGCCTTGATGATTGTATCTC
agcttac putative branch site (score: 99)
cttactacctatttcc CT-rich tract
ttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcatgagaatccttttgaattcctttgtcatttacgtgaataactaagttttgccatgtacatgccactgtgagcttactacctatttcccttttacagGTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTTCTTCCACTGTTGAAGCGCCTTGATGATTGTATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
ggcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - tgccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc