1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aactccatgatgataagtaaattacaaaccaagtaattaagtctggcttactgaatttgtttgttggtactgagctggatcatatattattattatgcagCCTGCAATTCTTCCAATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTGTGTGTCCCTGGAG
species | Zea mays |
transcript | GRMZM2G180732_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACCTATCTTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCG CCTGCAATTCTTCCAATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTGEST: gi|67039587|gb|CO465842.1|CO465842
genomic: AACCTATCTTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCGgtatgtcttc ... tattatgcagCCTGCAATTCTTCCAATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTG
EST: AACCTATCTTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCG CCTGCAATTCTTCCAATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTG
genomic: AACCTATCTTGCTAGACACTGGTGAAATGAAGGAACCATATGATTGGGCGgtatgtcttc ... tattatgcagCCTGCAATTCTTCCAATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTG
gcttactgaatttgtttgttggtactgagctggatcatatattattattatgcagCCTGCAATTCTTCCAATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTGTGTGTCCCTGGAG
ggcttac putative branch site (score: 126)
tggatcatatattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactccatgatgataagtaaattacaaaccaagtaattaagtctggcttactgaatttgtttgttggtactgagctggatcatatattattattatgcagCCTGCAATTCTTCCAATTCAGATCATAAGAATCGGCCAGCTGGCTATCTTGTGTGTCCCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - -tgatgat
- - - - - - - - - - - - caaacca
- - - - - - - - - - - - - - - - - - - - - - - cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggatc