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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattaatagtcaataatatagtcaaaccaatgccatttttatctgctctattgcaattcctatattcccttaaccatagttatttttcatgaatctagGTTCACTGGTTCTGCATGGGCATCTGTCCTACAGGGTTGGGGTAACCTGGCGTGCATGTACTG

Basic information

species Zea mays
transcript GRMZM2G156356_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148962850|gb|EE013773.2|EE013773
EST:     TCCGTGATTTGATGTG                         GTTCACTGGTTCTGCATGGGCATCTGTCCTACAGGGTTGGGGTAACCTGGC
genomic: TCCGTGATTTGATGTGgtattaattt ... atgaatctagGTTCACTGGTTCTGCATGGGCATCTGTCCTACAGGGTTGGGGTAACCTGGC
EST: gi|31351097|gb|CD435454.1|CD435454
EST:     GGAAATGGACTTATGATTCCTCGCGCTGTATTCATCCGTGATTTGATGTG                         GGTCACTGGTTCTGCTTGGGCATCTGTCCTA
genomic: GGAAACGGACTTATGATTCCTCGCGCTGTATTCATCCGTGATTTGATGTGgtattaattt ... atgaatctagGTTCACTGGTTCTGCATGGGCATCTGTCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctctattgcaattcctatattcccttaaccatagttatttttcatgaatctagGTTCACTGGTTCTGCATGGGCATCTGTCCTACAGGGTTGGGGTAACCTGGCGTGCATGTACTG
                        ccttaac  putative branch site (score: 3)
                                       tttttcat  putative PPT
                                atagttatttttcat  TA-rich tract