1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaatttctctctctctcatgcacacccccacacatcctttctgtaattgctttttgcaaccttacatcattgtaatgctcaagtgcttcaaaggattatagctgacgaagtaagctcatctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAACAAAATAAGCAGATAAATGAGCTGAGGACTGCAGTAAATGCTCATGCAAGTGATAG
species | Zea mays |
transcript | GRMZM2G056099_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATCTTCATTTCTAGTTCTGGAGATCAAACTCATACTATGAGTGGAAATG GAGCTATGACCTTCGATTTGGAATATTCTCGATGGCAAGAGGAACAAAATAEST: gi|78116764|gb|DV535151.1|DV535151
genomic: AATCTTCATTTCTAGTTCTGGAGATCAAACTCATACTATGAGTGGAAATGgtaaaatttc ... atctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAACAAAATA
EST: AATCTTCATTTCTAGTTCTGGAGATCAAACTCATACTATGAGTGGAAATG GAGCTATGACCTTCGATTTEST: gi|60397549|gb|DN230365.1|DN230365
genomic: AATCTTCATTTCTAGTTCTGGAGATCAAACTCATACTATGAGTGGAAATGgtaaaatttc ... atctctgcagGAGCTATGACCTTCGATTT
EST: AATCTTCATTTCTAGTTCTGGAGATCAAACTCATACTATGAGTGGAAATG GAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAACAAAATAEST: gi|211277779|gb|FL330877.1|FL330877
genomic: AATCTTCATTTCTAGTTCTGGAGATCAAACTCATACTATGAGTGGAAATGgtaaaatttc ... atctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAACAAAATA
EST: AATCTTCATTTCTAGTTCTGGAGATCAAACTCATACTATGAGTGGAAATG GAGCTATGACCTTCGATTTGGAATATTCTCGATGGCAAGAGGAACAAAATA
genomic: AATCTTCATTTCTAGTTCTGGAGATCAAACTCATACTATGAGTGGAAATGgtaaaatttc ... atctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAACAAAATA
taatgctcaagtgcttcaaaggattatagctgacgaagtaagctcatctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAACAAAATAAGCAGATAAATGAGCTGAGGACTGCAGTAAATGCTCATGCAAGTGATAG
agctgac putative branch site (score: 7)
ctcatctct putative PPT
attata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatttctctctctctcatgcacacccccacacatcctttctgtaattgctttttgcaaccttacatcattgtaatgctcaagtgcttcaaaggattatagctgacgaagtaagctcatctctgcagGAGCTATGACCTTCGATTTAGAATATTCTCGATGGCAAGAGGAACAAAATAAGCAGATAAATGAGCTGAGGACTGCAGTAAATGCTCATGCAAGTGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG