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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcattctctttctttttgtttgcaaatgaacctgtaatgctgagatattttgtgttccattccagattgtatcactcctagtttttttgtacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTTGTTGAAATTCTATTTCCTAAGACAAGACCAGTTTCATCTTTGCCAGACT

Basic information

species Zea mays
transcript GRMZM2G155314_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94476824|gb|EB705782.1|EB705782
EST:     TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGGAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCT
genomic: TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCT
EST: gi|74245146|gb|DT653060.1|DT653060
EST:     TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGAAAATCCCGATCATGTACCCAGCATTTAA
genomic: TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAA
EST: gi|71772874|gb|DR970797.1|DR970797
EST:     TGTNCA-GTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
genomic: TGT-CAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
EST: gi|78118021|gb|DV536408.1|DV536408
EST:     TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
genomic: TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
EST: gi|91048309|gb|EB158727.1|EB158727
EST:     TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGC
genomic: TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGC
EST: gi|76012307|gb|DT939477.1|DT939477
EST:     TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
genomic: TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
EST: gi|78107760|gb|DV526178.1|DV526178
EST:     TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
genomic: TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
EST: gi|74242116|gb|DT650030.1|DT650030
EST:     TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGAAAATCCCGATCATGTACCCAGCATTTTAATGGGCATCGGGAGCT
genomic: TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTT-AATGGGCATCGGGAGCT
EST: gi|67031456|gb|CO460205.1|CO460205
EST:     TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAG                         GATGGGGAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT
genomic: TTGTCAAGTTTTTGCTAGAGGTTGGAGCTGATCCTAACATTCCTGATGAGgtgatgaatc ... tacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattttgtgttccattccagattgtatcactcctagtttttttgtacaatgcagGATGGGAAAATCCCGATCATGTACCCAGCATTTAATGGGCATCGGGAGCTTGTTGAAATTCTATTTCCTAAGACAAGACCAGTTTCATCTTTGCCAGACT
                                     tttttttgt  CT-rich tract
                                     tttttttgtacaat  TA-rich tract