1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaattgtatccgtccaacataagtttgccttctgtaattagtatcttaatatttctcaccagttaacaatttaaaatttggttcttttgaaatgctacagGTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCGGAGTATGATAAATCCTTAGACTTCGAAAGTTTGAACCCTGGTGAGCAG
species | Zea mays |
transcript | GRMZM5G856653_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAATGCAATTCCTAAATGGACCGGGCTGCTACCTAGATCAGGGAACATG GTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCGEST: gi|211232468|gb|FK968372.1|FK968372
genomic: CAAATGTGATTCCTAAATGGACCGGGCTGCTACCTAGATCAGGGAACATGgttagtgttt ... aatgctacagGTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCG
EST: CAAATGTGATTCCTAAATGGACCGGGCTGCTACCTAGATCAGGGAACATG GTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCGEST: gi|211232471|gb|FK968375.1|FK968375
genomic: CAAATGTGATTCCTAAATGGACCGGGCTGCTACCTAGATCAGGGAACATGgttagtgttt ... aatgctacagGTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCG
EST: CAAATGTGATTCCTAAATGGACCGGGCTGCTACCTAGATCAGGGAACATG GTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCGEST: gi|211437009|gb|FL298821.1|FL298821
genomic: CAAATGTGATTCCTAAATGGACCGGGCTGCTACCTAGATCAGGGAACATGgttagtgttt ... aatgctacagGTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCG
EST: CAAATGTGATTCCTAAATGGACCGGGCTGCTACCTAGATCAGGGAACATG GTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCG
genomic: CAAATGTGATTCCTAAATGGACCGGGCTGCTACCTAGATCAGGGAACATGgttagtgttt ... aatgctacagGTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCG
ttaatatttctcaccagttaacaatttaaaatttggttcttttgaaatgctacagGTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCGGAGTATGATAAATCCTTAGACTTCGAAAGTTTGAACCCTGGTGAGCAG
ttaacaatttaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattgtatccgtccaacataagtttgccttctgtaattagtatcttaatatttctcaccagttaacaatttaaaatttggttcttttgaaatgctacagGTAATCAACATGGAGTGGGGAAACTTCAGATCAGATAAACTTCCAAGGTCGGAGTATGATAAATCCTTAGACTTCGAAAGTTTGAACCCTGGTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - tgtatcc
- - - - - - - caacata
- - - - - - - - - - - - - -ccttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttct