1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggtctaccctttgttctagtaatctagttatctcaatgggtttgtcaaatgcatagcaatcatataatttccttgaatggatcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAACGCTAAGTTTGCAGAGTACGAGAAGAAGTATGCAGATGATGCAGCAACC
species | Zea mays |
transcript | GRMZM2G033208_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACEST: gi|7137734|gb|AW499243.1|AW499243
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCAC
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|6952400|gb|AW424468.1|AW424468
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|71311290|gb|DR791959.1|DR791959
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|148999663|gb|EE036652.2|EE036652
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCCGA-GGTGCTGCACTTGAGGCEST: gi|74242160|gb|DT650074.1|DT650074
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCC-GAAGGTGCTGCACTTGAGGC
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|78083891|gb|DV512284.1|DV512284
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|78079232|gb|DV507644.1|DV507644
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|31360105|gb|CD444462.1|CD444462
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAGEST: gi|67017393|gb|CO446142.1|CO446142
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTACGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|9952380|gb|BE638963.1|BE638963
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|76281987|gb|DV021555.1|DV021555
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|67012406|gb|CO441155.1|CO441155
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTACGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|71435831|gb|DR816881.1|DR816881
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAAEST: gi|76285425|gb|DV024993.1|DV024993
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
EST: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAG TCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
genomic: AACCTTGGATGGCCCTATGACACATTCTTTGTACCAGAGGACGTCAAGAGgttggtctac ... atcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAA
atgggtttgtcaaatgcatagcaatcatataatttccttgaatggatcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAACGCTAAGTTTGCAGAGTACGAGAAGAAGTATGCAGATGATGCAGCAACC
aatcatataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtctaccctttgttctagtaatctagttatctcaatgggtttgtcaaatgcatagcaatcatataatttccttgaatggatcattgcagTCACTGGAGCCGCCACACACCCGAAGGTGCTGCACTTGAGGCTGATTGGAACGCTAAGTTTGCAGAGTACGAGAAGAAGTATGCAGATGATGCAGCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG