1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ttgtatctttcattttctgctgacatgaagatgagtgaaaataaagcatctctgtgattggaagatggcttctaagaactgttttacttggcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCCTTATATCTAGTTCCATTGGATGATGATGTCTTGTCTCTTGAACTTGACC
species | Zea mays |
transcript | GRMZM2G003734_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAG ATCCTGGAGGAAGAGAAAGTTCATCCGAAACTGACATTCGGEST: gi|148972311|gb|EE023217.2|EE023217
genomic: GGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAGgtatctgtta ... gcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGG
EST: GGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAG ATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCCEST: gi|91049806|gb|EB160224.1|EB160224
genomic: GGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAGgtatctgtta ... gcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCC
EST: GGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAG ATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCCEST: gi|148963504|gb|EE014525.2|EE014525
genomic: GGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAGgtatctgtta ... gcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCC
EST: GGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAG ATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCCEST: gi|32932185|gb|CF036997.1|CF036997
genomic: GGGAATACTTCCTTTACTTTGTACCTCGCCGCACTGTTGCTTGTGAGAAGgtatctgtta ... gcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCC
EST: TACCTCGCCGCACTGTTGCTTGTGAGAAG ATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCCEST: gi|33091408|gb|CF051402.1|CF051402
genomic: TACCTCGCCGCACTGTTGCTTGTGAGAAGgtatctgtta ... gcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCC
EST: ACCTCGCCGCACTGTTGCTTGTGAGAAG ATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCC
genomic: ACCTCGCCGCACTGTTGCTTGTGAGAAGgtatctgtta ... gcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCC
gcatctctgtgattggaagatggcttctaagaactgttttacttggcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCCTTATATCTAGTTCCATTGGATGATGATGTCTTGTCTCTTGAACTTGACC
ttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtatctttcattttctgctgacatgaagatgagtgaaaataaagcatctctgtgattggaagatggcttctaagaactgttttacttggcatctgcagATCCTGGAGGAAGAGAAAGTTCATCAGAAACTGACATTCGGAGAATATCCCTTATATCTAGTTCCATTGGATGATGATGTCTTGTCTCTTGAACTTGACC
- - - -tttcatt
- - - - - - - -tctgctg
- - - - - - - - - - - acatgaa
- - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcttct