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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaagaaaaaaaaagcaggagccatgaagaattaatactcagtgctaaaaatgtggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGACTGGATAGTGATGGCCTCCATGACCACGCACAAGTATGGAACAGCAAAA

Basic information

species Zea mays
transcript GRMZM5G882527_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G882527_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g42470.1 (Oryza sativa), 3'ss of exon 4
gtaaaaaaagaaaaaaaaagcaggagccatgaagaattaatact-cagtgctaaaaatgtggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGACTGGATAGTGATGGCCTCCATGACCACGCACAAGTATGGAACAGCAAAA
      | |  ||||||||  |  |      ||||| ||||||| || |  | ||||  | | ||    ||  ||  ||| |||     |  | |    ||   || |    |||||||| |||||||||||||| || |||||||||||| | ||||| || ||| |||| || |||||||||||||||||                       
----gtacactaaaaaaaaataaaaa----aaagaagtaatacttcatttttgaaaactttggac----ag--gatgacattttctttgttttgt----ctatatggtg---cagTTCCTATCCATGAGGATTGCTTCAATGAGCCCAGTGTTGTATGGCTTTGGAATGGACAGCGATGGCCTCCATGACCAA----------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcacttctagctgacaacaatttgcaaatcatatactcctgcctgttttttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTATATGGGTTCGGACTGGATAGTGATGGCCTCCATGACCACGCACAAGTATGGAACAGCAAAA
         agctgac  putative branch site (score: 3)
                                    ctcctgcctgtttttt  putative PPT
                          aaatcatata  TA-rich tract