1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggcggttgtctcatctgttctagtacatgataatctccatacgctgcagaatggaaatggtacctctgaatctgaaagatggcttaccatgccattttctgaccgactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCTGCCGTGCAGCTCGCCAACGCCCGCGACAAGCCATG
species | Zea mays |
transcript | GRMZM5G838196_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCTEST: gi|148962266|gb|EE013089.2|EE013089
genomic: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAGgtaggcggtt ... gactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCT
EST: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAG CTCACCTGCCTCATCAACGACTCTGCCGGGGTCGTCGCGACAAACACCGCTEST: gi|13557980|gb|BG549336.1|BG549336
genomic: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAGgtaggcggtt ... gactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCT
EST: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCTEST: gi|211164012|gb|FL463865.1|FL463865
genomic: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAGgtaggcggtt ... gactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCT
EST: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCTEST: gi|211164011|gb|FL463864.1|FL463864
genomic: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAGgtaggcggtt ... gactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCT
EST: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCTEST: gi|211467384|gb|FL438565.1|FL438565
genomic: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAGgtaggcggtt ... gactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCT
EST: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAG CTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCT
genomic: AGGAAGTGGGGGACGACACGAACATCCTGTTCATCACCACCCCAGGACAGgtaggcggtt ... gactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCT
gtacctctgaatctgaaagatggcttaccatgccattttctgaccgactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCTGCCGTGCAGCTCGCCAACGCCCGCGACAAGCCATG
ttctgac putative branch site (score: 8)
ctccc putative PPT
attttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcggttgtctcatctgttctagtacatgataatctccatacgctgcagaatggaaatggtacctctgaatctgaaagatggcttaccatgccattttctgaccgactcccaagCTCACCTGCCTCATCAACGACTCTGCCGGCGTCGTCGCGACAAACACCGCTGCCGTGCAGCTCGCCAACGCCCGCGACAAGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC