Sequence
atgc intronic sequence ATGC exonic sequencegtatgttgtgttcatagtgcttgttctttcttttagtaacgtggcaagggtacattaggttgtttctaatatctttgtgatatgcagATATATTTGAGGTAGCCACAGACGATGGTACAGTACTTGCCATGAAGCTTCATAGGTTGGGCAGGACATCTTTTAGAGCTGTGAAATCTAAGCGTGACTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G038309_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 3'ss of exon 4
gtatgttgtgttcatagtgcttgttc-tttcttttagtaacgtggcaagggtacattaggt---------tgtttctaatatctttgtgatatgcagATATATTTGAGGTAGCCACAGACGATGGTACAGTACTTGCCATGAAGCTTCATAGGTTGGGCAGGACATCTTTTAGAGCTGTGAAATCTAAGCGTGACTA
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gtacatgctgttgatgatgttttctcatgttttacttttatgtcacaatcgcatatcagatgttctaacatttgtctaatctttcctttacctgcagACATCTTTGAGGTTGCCACAGAGGATGGTACCGTTTTGGCCATGAAGCTTCATAGGTTGGGTAGGACATCTTTTAGGGCTGTGAAATCCAAGCGTGACTA
upper sequence: GRMZM2G038309_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G33320.1 (Glycine max), 3'ss of exon 4
-------gtatgttgtgttcatagtgcttgttctttcttttagtaacgtggcaagggtacattaggttgtttctaatatc-tttgtgatatgc-agATATATTTGAGGTAGCCACAGACGATGGTACAGTACTTGCCATGAAGCTTCATAGGTTGGGCAGGACATCTTTTAGAGCTGTGAAATCTAAGCGTGACTA
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gtattttagttaatgttcttctgatgtggtgccctttgttcaatcacatttcagacgtt--ttctgctaattgtgttgctgtttgtgctctgctagATATATTTGAGGTTGCCCGTGAAGACGGAACAGTTCTAGCTATGAAGTTGCATAGGCTTGGTAGAGTCTCTTTTAGAGCTGTCAAATCTAAGCGTGACTA
upper sequence: GRMZM2G038309_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 4
gtatgttgtgtt-catagtgcttgttctttcttttagtaacgtggcaagggt--------acattaggt--tgtttctaatatctttgtgatatgcagATATATTTGAGGTAGCCACAGACGATGGTACAGTACTTGCCATGAAGCTTCATAGGTTGGGCAGGACATCTTTTAGAGCTGTGAAATCTAAGCGTGACTA
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gtaatttttcttatatattcattttaatttcctgtaaaaaaattttgtttgtgtgttttcacattagatactgattatggtat-ttcgtttcttcaagATATATTTGAAGTTGCCAAGGAAGATGGCACAGTCTTGGCAATGAAGCTGCATAGGCTGGGTAGAACTTCTTTTAGGGCCGTAAAATCTAAGCGTGATTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagtaacgtggcaagggtacattaggttgtttctaatatctttgtgatatgcagATATATTTGAGGTAGCCACAGACGATGGTACAGTACTTGCCATGAAGCTTCATAGGTTGGGCAGGACATCTTTTAGAGCTGTGAAATCTAAGCGTGACTA
tctttgt CT-rich tract
tttctaatatcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttgtgttcatagtgcttgttctttcttttagtaacgtggcaagggtacattaggttgtttctaatatctttgtgatatgcagATATATTTGAGGTAGCCACAGACGATGGTACAGTACTTGCCATGAAGCTTCATAGGTTGGGCAGGACATCTTTTAGAGCTGTGAAATCTAAGCGTGACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT