1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acccatttgttgtgtcaccatgtaatcatttatgatgttattttaccttgaatttatttatatatagtgggattgtaaaaagtattgtatttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACAGAATGGGTTCTAACATCTGTGACATTATTGACACTTGGATCGGTCTTTA
species | Zea mays |
transcript | GRMZM5G809546_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAG GCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACAEST: gi|71426547|gb|DR807597.1|DR807597
genomic: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAGgttaggttcc ... ttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACA
EST: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAN GCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACAEST: gi|149098782|gb|EE184793.2|EE184793
genomic: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAGgttaggttcc ... ttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACA
EST: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAN GCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACAEST: gi|149099086|gb|EE185106.2|EE185106
genomic: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAGgttaggttcc ... ttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACA
EST: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCATTTGT-CAG GCCATTGGACAAGTTCTT-ATCTCCGTCCCTATGTGAATGATTTCAGCACAEST: gi|149101791|gb|EE287390.2|EE287390
genomic: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAGgttaggttcc ... ttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACA
EST: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAN GCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACAEST: gi|74244984|gb|DT652898.1|DT652898
genomic: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAGgttaggttcc ... ttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACA
EST: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAG GGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACEST: gi|78106673|gb|DV525091.1|DV525091
genomic: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAGgttaggttcc ... ttgtttttagG-CCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCAC
EST: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAG GCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACAEST: gi|148951012|gb|EC896664.2|EC896664
genomic: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAGgttaggttcc ... ttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACA
EST: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAN GCCATTGGACAAGTTCTTTATCTCCGTCCCTATGT
genomic: AGGTTCTTCAGTATACAAGATATGCTTCTGTTGGATTTGCAATTGTTCAGgttaggttcc ... ttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGT
ccttgaatttatttatatatagtgggattgtaaaaagtattgtatttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACAGAATGGGTTCTAACATCTGTGACATTATTGACACTTGGATCGGTCTTTA
tttgttttt CT-rich tract
attgtaaaaagtattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccatttgttgtgtcaccatgtaatcatttatgatgttattttaccttgaatttatttatatatagtgggattgtaaaaagtattgtatttgtttttagGCCATTGGACAAGTTCTTTATCTCCGTCCCTATGTGAATGATTTCAGCACAGAATGGGTTCTAACATCTGTGACATTATTGACACTTGGATCGGTCTTTA
- - -tttgttg
- - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaag