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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacgcttgccattttatggaagcattcatgttccactttcccgtttttaatgtgcttctgcttttctgtttgaagGACTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAA

Basic information

species Zea mays
transcript GRMZM2G135904_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135904_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g49430.1 (Oryza sativa), 3'ss of exon 3
gtaagacgcttgccattttatggaagcattcatgttccact-ttcccgtttttaatgtgcttctgcttttctgtttgaagGACTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAA
|||||  ||||   ||   ||   | ||||| | ||  | | ||   ||| |||||     | || | | || | ||||||| ||||| ||||| ||||||||||| ||||||||| ||||||| || ||||||||||||
gtaaggtgcttat-atgagatttta-cattcctctttaagtctttatgttattaat-----tatgttctactttgtgaagGATTATGTTGCAACGAGGTGGTACCGAGCACCTGAATTATGTGGCTCATTTTTCTCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016391|gb|CO445140.1|CO445140
EST:     GACTTGCCCGTGCATCATTCAACGATGCCCCTTCAGCTATATTTTGGACA                         GATTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTT
genomic: GACTTGCCCGTGCATCATTCAATGATGCCCCTTCAGCTATATTTTGGACAgtaagacgct ... ctgtttgaagGACTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTT
EST: gi|22545672|gb|BU098031.1|BU098031
EST:     GACTTGCCCGTGCATCATTCAATGATGCCCCTTCAGCTATATTTTGGACA                         GATTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTT
genomic: GACTTGCCCGTGCATCATTCAATGATGCCCCTTCAGCTATATTTTGGACAgtaagacgct ... ctgtttgaagGACTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTT
EST: gi|61118794|gb|DN559755.1|DN559755
EST:     GACTTGCCCGTGCATCATTCAATGATGCCCCTTCAGCTATATTTTGGACA                         GATTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTT
genomic: GACTTGCCCGTGCATCATTCAATGATGCCCCTTCAGCTATATTTTGGACAgtaagacgct ... ctgtttgaagGACTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcattcatgttccactttcccgtttttaatgtgcttctgcttttctgtttgaagGACTATGTGGCAACAAGGTGGTACCGGGCACCTGAACTATGTGGTTCCTTTTTCTCCAAA
                        ttttaat  putative branch site (score: 3)
                                  cttctgcttttctgtt  putative PPT
                       tttttaatgt  TA-rich tract