Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctgccgctgccattgctggaatcttgcgccttgggggaggcaggacggtgccaagtactatcaggcagcgttctgtcactgagattctacccttgtattattgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGGCTACCTTCTCGACCACGGTGGCGACCCTGTGATGCCGGACTCCATGGG

Basic information

species Zea mays
transcript GRMZM2G155314_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94476824|gb|EB705782.1|EB705782
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|78083174|gb|DV511567.1|DV511567
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|74245146|gb|DT653060.1|DT653060
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|211123343|gb|FL425266.1|FL425266
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|91873915|gb|EB403872.1|EB403872
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|71772874|gb|DR970797.1|DR970797
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|5499093|gb|AI854960.1|AI854960
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTTGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|78118021|gb|DV536408.1|DV536408
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|91048309|gb|EB158727.1|EB158727
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|76012307|gb|DT939477.1|DT939477
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|78107760|gb|DV526178.1|DV526178
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|211116198|gb|FL414284.1|FL414284
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGARAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|74242116|gb|DT650030.1|DT650030
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|93283808|gb|EB676072.1|EB676072
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|67031456|gb|CO460205.1|CO460205
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: gi|91870178|gb|EB400743.1|EB400743
EST:     GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG                         GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 12

CGGAACGCGCTCCACCTGGCCGCGGAGATGGGCCGTCTTGAGGTTTGCAGGTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGGCTACCTTCTCGACCACGGTGGCGACCCTGTGATGCCGGACTCCATGGG


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 2

CGGAACGCGCTCCACCTGGCCGCGGAGATGGGCCGTCTTGAGGTTTGCAGGTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGGCTACCTTCTCGACCACGGTGGCGACCCTGTGATGCCGGACTCCATGGG


Block sizes: 34 (upstream exon), 21 (downstream exon)
Score: 2

CGGAACGCGCTCCACCTGGCCGCGGAGATGGGCCGTCTTGAGGTTTGCAGGTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGGCTACCTTCTCGACCACGGTGGCGACCCTGTGATGCCGGACTCCATGGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatcaggcagcgttctgtcactgagattctacccttgtattattgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGGCTACCTTCTCGACCACGGTGGCGACCCTGTGATGCCGGACTCCATGGG
                                       tattattgtgtaata  TA-rich tract