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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactatctccgccctagttctaacaaatttatatcatgccatgacacatctaacttttagtaatttacctgctctaatctctgattcggtttcctgacagGTTGAGCACATGTTAAATGACAGATTACTGAATTTTGTTGACATTGATTTGCATGATGTGAAG

Basic information

species Zea mays
transcript GRMZM5G872204_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872204_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G51810.1 (Glycine max), 3'ss of exon 4
-----tactatctccgccctag-ttctaacaaatttatatcatgccatgacacatctaacttttagtaatttacctgctctaatctctgattcggtttcctgacagGTTGAGCACATGTTAAATGACAGATTACTGAATTTTGTTGACATTGATTTGCATGATGTGAAG
     |   |  | |  ||| | || |  | | | |  ||||   | ||  | |    |  | |  ||   |     |    ||  ||  |||   |||||| ||||||||||||||||||||||||||||| ||  | |||||  | |||||||| || || || |||
ctatttggaagtttcatcctggattttggccattatccatcagttcttggta-acacgatgtctgctacactgttaacatagattgct--ttc---ttcctgtcagGTTGAGCACATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTACAAGAGGTCAAG

upper sequence: GRMZM5G872204_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G28890.2 (Glycine max), 3'ss of exon 4
tactatctccgccctag--ttctaacaaatttatatcatgccatgacacatctaacttttagtaatttacctgctctaatctctgattcggtttcctgacagGTTGAGCACATGTTAAATGACAGATTACTGAATTTTGTTGACATTGATTTGCATGATGTGAAG
|   |  | |  ||| |  || |  | | | |  ||||   | ||  | |   ||  | |   |          |   ||   |   |    ||| || ||||||||||| ||||||||||||||||| ||  | |||||  | |||||||| || || || |||
ttggagtttcatcctggatttttggccattgtccatcagttcttggta-acacaatgtctgccacaccgttaagtaacatagattgcttt-cttcttgtcagGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTACAAGAGGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatctaacttttagtaatttacctgctctaatctctgattcggtttcctgacagGTTGAGCACATGTTAAATGACAGATTACTGAATTTTGTTGACATTGATTTGCATGATGTGAAG
                                            tttcct  CT-rich tract
     taacttttagtaattt  TA-rich tract