1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaccctccttcgtctctcttctcttccggcatcggcggcggatgtcgcgtcattgtttgatcggttgcctggcttgggttgggttgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGCGCCGCCAACATCCCCTTCCTACTGCTCCAGCTCCCGCAGATCGTCCTCA
species | Zea mays |
transcript | GRMZM2G156356_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAG GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGCEST: gi|211213516|gb|FL341943.1|FL341943
genomic: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
EST: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAG GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGCEST: gi|71313561|gb|DR793355.1|DR793355
genomic: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
EST: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAG GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGCEST: gi|31351097|gb|CD435454.1|CD435454
genomic: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
EST: GTCACTGCCTCCAAGCCGGTTCTCAAG GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCCGGCEST: gi|211482771|gb|FL310042.1|FL310042
genomic: GTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
EST: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAG GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
genomic: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
ggatgtcgcgtcattgtttgatcggttgcctggcttgggttgggttgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGCGCCGCCAACATCCCCTTCCTACTGCTCCAGCTCCCGCAGATCGTCCTCA
gtttgat putative branch site (score: 5)
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccctccttcgtctctcttctcttccggcatcggcggcggatgtcgcgtcattgtttgatcggttgcctggcttgggttgggttgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGCGCCGCCAACATCCCCTTCCTACTGCTCCAGCTCCCGCAGATCGTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT