1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acaccagtgcttagatggactatcatttttgccatctgtacctttatatcatttattatgctgctgatgtacctggaaatttgtttcttgtaatggatagGTTGCTTCTCTGTCCAGTGGGTGGATCACTGGATTGTGGGTTGTGCTAACTGCAGGCTGGCTTGTCAGCCTATCATAAGGAAAGTGAAAAAGAGACAACA
species | Zea mays |
transcript | GRMZM2G056099_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTGCGCGGAGTGGAGATCCATCCGGACCTGGTTCGATTTCTTCATCTCG GTTGCTTCTCTGTCCAGTGGGTGGATCACTGGATTGTGGGTTGTGCTAACTEST: gi|50323433|gb|CO518559.1|CO518559
genomic: CTTGCGCGGAGTGGAGATCCATCCGGACCTGGTTCGATTTCTTCATCTCGgtaagtaacc ... taatggatagGTTGCTTCTCTGTCCAGTGGGTGGATCACTGGATTGTGGGTTGTGCTAACT
EST: CTTGCGCGGAGTGGAGATCCATCCGGACCTGGTTCGATTTCTTCATCTCG GTTGCTTCTCTGTCCAGTGGGTGGATCACTGGATTGTGGGTTGTGCTAACT
genomic: CTTGCGCGGAGTGGAGATCCATCCGGACCTGGTTCGATTTCTTCATCTCGgtaagtaacc ... taatggatagGTTGCTTCTCTGTCCAGTGGGTGGATCACTGGATTGTGGGTTGTGCTAACT
atatcatttattatgctgctgatgtacctggaaatttgtttcttgtaatggatagGTTGCTTCTCTGTCCAGTGGGTGGATCACTGGATTGTGGGTTGTGCTAACTGCAGGCTGGCTTGTCAGCCTATCATAAGGAAAGTGAAAAAGAGACAACA
tgctgat putative branch site (score: 52)
tttcttgt putative PPT
atttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaccagtgcttagatggactatcatttttgccatctgtacctttatatcatttattatgctgctgatgtacctggaaatttgtttcttgtaatggatagGTTGCTTCTCTGTCCAGTGGGTGGATCACTGGATTGTGGGTTGTGCTAACTGCAGGCTGGCTTGTCAGCCTATCATAAGGAAAGTGAAAAAGAGACAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -ccagtgc
- - - - - - -gatggac
- - - - - - - - - - - - - - - - - -ctgtacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgga